PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G099600.1
Common NameB456_010G099600, LOC105773562
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 505aa    MW: 55047.6 Da    PI: 9.0599
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G099600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.5e-057092123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        + C++C+k F r  nL+ H r H
  Gorai.010G099600.1 70 FMCEICNKGFQRDQNLQLHRRGH 92
                        89*******************88 PP

2zf-C2H213.10.00029147169123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC++C+k++  +s+ k H + +
  Gorai.010G099600.1 147 WKCEKCSKTYAVQSDWKAHSKIC 169
                         58*****************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.31E-76992No hitNo description
Gene3DG3DSA:3.30.160.602.1E-56992IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.997092IPR007087Zinc finger, C2H2
PfamPF121716.4E-57092IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0317092IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807292IPR007087Zinc finger, C2H2
SMARTSM00355240112142IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.4E-4135168IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.31E-7142167No hitNo description
SMARTSM00355110147167IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MDESMSNLTS TSGEFSASSG TVLYPPQQSF ASTNQAPAAA KKKRNLPGNP DPDAEVIALS  60
PKTLLATNRF MCEICNKGFQ RDQNLQLHRR GHNLPWKLKQ RTNKEVVRKK VYVCPETTCV  120
HHDPARALGD LTGIKKHFCR KHGEKKWKCE KCSKTYAVQS DWKAHSKICG TREYRCDCGT  180
LFSRRDSFIT HRAFCDALAE ESARAITGPA QQVPGGSSVS HMNNLQSQLH SHDFHGLSVK  240
REEHPFNARP TTEDSLNPPW PGPPSINLLD HPLSQNENPS QNTGSNTLLP PFQTQTASPH  300
MSATALLQKA AQMGVTMSQP LQSPVAAMAS MQRPYMSGGT SGSTSFALST AGSGLGLFPR  360
EDLGSGSPHG LASLGNKAAA AITSRFMEQS PTAAPNSLLH DMMCSLSTGF DGSSLFEQSF  420
NRVWNTKGNP IDFQEPTTDH LSKAKESHSQ GNNMGGNDGM TRDFLGLKAF PHRDFPNLAA  480
LNHRLNPSSR FGQQNQHSQT PWQG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196109KLKQRTNKEVVRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012451019.10.0PREDICTED: protein indeterminate-domain 7-like
SwissprotQ8H1F51e-117IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLA0A0D2U9N20.0A0A0D2U9N2_G
STRINGVIT_04s0008g01160.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-119indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]